Collaborations

Genome & Metagenome Analysis

• Kostas Bourtzis, UOI (Metagenomics of Etolikon Lagoon)

• Rick Cavicchioli, UNSW (Archaeal genomes)

• Shil DasSarma, UMBI (Archaeal genomes)

• Kostas Drainas, UOI (PAH degrading organisms)

• Jonathan Eisen, UCDavis (GEBA genomes)

• Harald Huber, Univ Regensburg (Archaeal genomes)

• Phil Hugenholtz, JGI (Analysis of microbial communities)

• Hans Peter Klenk , DSMZ (GEBA Genomes)

• Kostas Kormas, UTh (Crenarchaeal community)

• Steven Lindow, UCB (Pseudomonas syringae)

• Jere McBride, UTMB (Ehrlichia canis)

• Biswarup Mukhopadhyay, VBI (Archaeal genomes)

• Gary Olsen, UIUC (Archaeal genomes)

• Bharat Patel, Griffith Univ (Halothermothrix genome)

• Mircea Podar, ORNL (Ignicoccus sp)

• Karl Stetter, (Korarchaeal genome)

• Liu Wen-Tso, NUS (TA microbial community)

• Barny Whitman, UGA (Archaeal genomes)

• Carl Woese, UIUC (Archaeal genomes)

Methods and Data Processing Pipelines, SOPs

• Dimitris Achlioptas, UCSC (positional clusters)

• Mark Borodovsky, Gatech (gene models for metagenomic data)

• Dawn Field, CEH (Genomic Standards)

• Mihai Pop, CBCB/UMD (Metagenome data assembly)

• Isidore Rigoutsos, IBM (Methods in metagenomics)

Databases

• Inna Dubchak, LBNL (IMG)

• Phil Hugenholtz, JGI (IMG systems and GOLD)

• Dinos Liolios, UOC (GOLD)

• Victor Markowitz, LBNL (IMG systems and GOLD)